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Exercise for Gut Health: The Microbiome Connection

  • Writer: Kyle Cox
    Kyle Cox
  • Sep 1
  • 2 min read

Gut health is getting plenty of attention, and for good reason. A balanced gut microbiome (the community of trillions of microorganisms living in the digestive tract) is increasingly recognised as a foundation for overall wellbeing. While diet has long been in the spotlight, a wave of new research reveals that regular exercise is just as important in shaping a healthy gut.


Sausages arranged like a human digestive system on a dark background with toothpicks and halved tomatoes. Bright reds and pinks dominate.

How Exercise Impacts the Microbiome

The gut microbiome plays a crucial role in nutrient absorption, immune function, brain health, and even mood regulation. What’s exciting is that moving the body can actually “train” the microbiome for better performance. Moderate-intensity exercise has been shown to increase the diversity and abundance of beneficial bacteria. These changes help to reduce inflammation, support immune health, and protect against chronic disease.


When you exercise, skeletal muscles produce and release proteins called myokines, which act as messengers between organs. Myokines help communicate with gut microbes, promoting an environment where helpful bacterial species thrive. Studies also show that exercise helps adjust the balance of microbial populations, for instance by boosting bacteria known to protect the gut lining and reduce the risk of metabolic diseases.


Aerobic Exercise vs Resistance Training

Both aerobic and resistance training seem to have positive effects on gut health; however, aerobic exercise appears especially beneficial for boosting microbiome diversity. Moderate levels of cardio, such as brisk walking, cycling, and swimming, are linked to greater quantities of “good” bacteria like Akkermansia muciniphila and Faecalibacterium prausnitzii, both associated with improved gut and metabolic health.


High-intensity or prolonged exercise confers further benefits for advanced exercisers but may not be necessary for most people. In fact, too much strenuous activity can sometimes stress the gut, so a balanced weekly routine is best.


Setting Up an Exercise Routine for Gut Health

To encourage positive changes in the gut microbiome, research suggests aiming for:

  • 150–270 minutes per week of moderate to vigorous exercise (such as 30–45 minutes, 5 days a week),

  • Combining both aerobic training and resistance/strength activities,

  • Choosing activities that can be consistently maintained and enjoyed.


Simple activities such as walking, swimming, gentle cycling, or even gardening can make a difference. Start slow and gradually build up frequency and intensity. Remember, consistency counts more than perfection.


Beyond Movement: Combined Approach

While exercise is a powerful tool, it works best alongside other positive lifestyle factors. Eating a diverse range of whole foods rich in fibre, fermented foods (like yogurt or kefir), and managing stress all play their part in maintaining gut health. Exercise, however, stands out as a lifestyle change that supports the microbiome independently of diet.


Key Takeaways

Moderate, regular exercise is one of the simplest ways to nurture gut health and promote microbial diversity. By “training” the gut from the inside out, movement benefits the whole body, from digestion to immunity and mood. Whether just starting out or an experienced athlete, every step, pedal, or stretch contributes to a happier gut.


Ready to boost your gut health? Start with a Free Consultation at Allied Movement and get moving toward a healthier, more balanced microbiome.


 
 
 

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